Pakiet: r-bioc-ggbio (1.46.0-1)

[ Pakiet źródłowy: r-bioc-ggbio  ]

Visualization tools for genomic data

The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.

Inne pakiety związane z r-bioc-ggbio

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.16

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-annotationfilter

  facilities for filtering Bioconductor annotation resources

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-biovizbase (>= 1.29.2)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-ensembldb (>= 1.99.13)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.1.16)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures (>= 1.29.11)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.29.14)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.11.16)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-organismdbi

  smooth interfacing of different database packages

• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.16)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.13.13)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-variantannotation (>= 1.11.4)

  BioConductor annotation of genetic variants

• dep: r-cran-ggally

  GNU R extension to r-cran-ggplot2

• dep: r-cran-ggplot2 (>= 1.0.0)

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-gtable

  Arrange grobs in tables

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-tinytex

  GNU R helper to compile LaTeX documents

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