Pakiet: apbs (3.4.1-5)

[ Pakiet źródłowy: apbs  ]

Adaptive Poisson Boltzmann Solver

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including:

  * simulation of diffusional processes to determine ligand-protein and
    protein-protein binding kinetics,
  * implicit solvent molecular dynamics of biomolecules ,
  * solvation and binding energy calculations to determine
    ligand-protein and protein-protein equilibrium binding constants
    and aid in rational drug design,
  * and biomolecular titration studies.

APBS was designed to efficiently evaluate electrostatic properties for such simulations for a wide range of length scales to enable the investigation of molecules with tens to millions of atoms.

This package contains the apbs program and utilities.

Znaczniki: Dziedzina: Chemia, Zaimplementowane w: C, Interfejs użytkownika: interface::commandline, role::program, Zakres: Narzędzie

Inne pakiety związane z apbs

• dep: apbs-data (= 3.4.1-5)

  data files for APBS (Adaptive Poisson Boltzmann Solver)

• dep: libamd2 (>= 1:4.5.2)

  approximate minimum degree ordering library for sparse matrices

• dep: libapbs3 (= 3.4.1-5)

  Adaptive Poisson Boltzmann Solver

• dep: libarpack2 (>= 2.1)

  Fortran77 subroutines to solve large scale eigenvalue problems

• dep: libblas3

  Implementacje Basic Linear Algebra Reference, biblioteka współdzielona

  lub libblas.so.3

  pakiet wirtualny udostępniany przez libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libcamd2 (>= 1:4.5.2)

  symmetric approximate minimum degree library for sparse matrices

• dep: libccolamd2 (>= 1:4.5.2)

  constrained column approximate library for sparse matrices

• dep: libcholmod3 (>= 1:4.5.2)

  sparse Cholesky factorization library for sparse matrices

• dep: libcolamd2 (>= 1:4.5.2)

  column approximate minimum degree ordering library for sparse matrices

• dep: libfetk1.9 (>= 3.4.1)

  FETK libraries for APBS (shared libraries)

• dep: libgomp1 (>= 4.2.1)

  Biblioteka wspierająca GCC OpenMP (GOMP)

• dep: libjs-mathjax

  JavaScript display engine for LaTeX and MathML

• dep: libmaloc1 (>= 0.2-1)

  Object-oriented Abstraction Layer for C

• dep: libopenmpi3 (>= 4.1.4)

  high performance message passing library -- shared library

• dep: libspqr2 (>= 1:5.12.0+dfsg)

  sparse QR factorization library

• dep: libstdc++6 (>= 4.1.1)

  Standardowa biblioteka GNU C++, wersja 3

• dep: libsuitesparseconfig5 (>= 1:5.0.0)

  configuration routines for all SuiteSparse modules

• dep: libsuperlu5 (>= 5.3.0+dfsg1)

  Direct solution of large, sparse systems of linear equations

• dep: libumfpack5 (>= 1:4.5.2)

  sparse LU factorization library

Pobieranie apbs

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	75,9 KiB	364,0 KiB	[lista plików]
arm64	74,9 KiB	1 252,0 KiB	[lista plików]
armel	76,3 KiB	1 234,0 KiB	[lista plików]
armhf	73,2 KiB	1 234,0 KiB	[lista plików]
i386	75,3 KiB	358,0 KiB	[lista plików]
mips64el	76,6 KiB	1 253,0 KiB	[lista plików]
mipsel	77,2 KiB	1 236,0 KiB	[lista plików]
ppc64el	80,4 KiB	1 252,0 KiB	[lista plików]
s390x	72,1 KiB	311,0 KiB	[lista plików]