Pakiet: libsnpeff-java (5.1+d+dfsg-3)

[ Pakiet źródłowy: snpeff  ]

genetic variant annotation and effect prediction toolbox - lib

SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF).

SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes).

This package contains the library.

Inne pakiety związane z libsnpeff-java

• dep: junit5

  JUnit regression test framework for Java

• dep: libapfloat-java (>= 1.10.1)

  high performance arbitrary precision arithmetic library for Java

• dep: libbiojava6-java

  Java API to biological data and applications (version 6)

• dep: libcharts4j-java (>= 1.3)

  free, lightweight charts and graphs Java API

• dep: libcommons-cli-java (>= 1.5.0)

  Command line arguments and options parsing library

• dep: libcommons-codec-java (>= 1.15)

  Kodery i dekodery takie jak: Base64 i hexadecimal codec

• dep: libcommons-io-java (>= 2.11.0)

  Common useful IO related classes

• dep: libcommons-math3-java (>= 3.6.1)

  Java lightweight mathematics and statistics components

• dep: libdistlib-java (>= 1.0)

  Java library of statistical distribution functions

• dep: libfreemarker-java

  template engine written in Java

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libtrove3-java

  high performance collections for java

• sug: libsnpeff-java-doc

  Documentation for Snp Effect

Pobieranie libsnpeff-java

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
all	2 099,5 KiB	19 874,0 KiB	[lista plików]