Pakket: umis (1.0.9-1)

[ Bron: umis  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andere aan umis gerelateerde pakketten

• dep: libc6 (>= 2.17) [arm64, ppc64el]

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  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.4) [niet arm64, ppc64el]

• dep: python3

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  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

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• dep: python3-pandas

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• dep: python3-pysam

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• dep: python3-regex

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• dep: python3-scipy

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• dep: python3-toolz

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• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

umis downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	25,8 kB	116,0 kB	[overzicht]
arm64	25,4 kB	156,0 kB	[overzicht]
armel	26,3 kB	111,0 kB	[overzicht]
armhf	24,9 kB	103,0 kB	[overzicht]
i386	26,4 kB	115,0 kB	[overzicht]
mips64el	25,7 kB	157,0 kB	[overzicht]
ppc64el	26,4 kB	156,0 kB	[overzicht]