Pakket: r-bioc-pwalign (1.2.0-2)

[ Bron: r-bioc-pwalign  ]

Perform pairwise sequence alignments

The two main functions in the package are pairwiseAlignment() and stringDist(). The former solves (Needleman-Wunsch) global alignment, (Smith-Waterman) local alignment, and (ends-free) overlap alignment problems. The latter computes the Levenshtein edit distance or pairwise alignment score matrix for a set of strings.

Andere aan r-bioc-pwalign gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [mips64el, s390x]

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.20

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.71.5)

  GNU R string objects representing biological sequences

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• sug: r-cran-runit

  GNU R package providing unit testing framework

r-bioc-pwalign downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	737,3 kB	1.105,0 kB	[overzicht]
arm64	735,9 kB	1.145,0 kB	[overzicht]
mips64el	734,3 kB	1.153,0 kB	[overzicht]
ppc64el	737,8 kB	1.145,0 kB	[overzicht]
riscv64	736,7 kB	1.089,0 kB	[overzicht]
s390x	737,0 kB	1.109,0 kB	[overzicht]