Pakket: velvet (1.2.10+dfsg1-9)

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Homepage [github.com]

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Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Purpose: Analysing

Andere aan velvet gerelateerde pakketten

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dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: zlib1g (>= 1:1.2.0.2)

compressiebibliotheek - programma's

sug: velvet-example

Example data for the Velvet sequence assembler

velvet downloaden

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
mips64el	658,0 kB	1.511,0 kB	[overzicht]