Pakket: lumpy-sv (0.3.1+dfsg-7 en anderen)

[ Bron: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Andere aan lumpy-sv gerelateerde pakketten

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: sambamba

  tools for working with SAM/BAM data

lumpy-sv downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
mips64el	0.3.1+dfsg-7+b1	175,8 kB	777,0 kB	[overzicht]