Pakket: iqtree (2.0.7+dfsg-1 en anderen)

[ Bron: iqtree  ]

efficient phylogenetic software by maximum likelihood

IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others:

 * A novel fast and effective stochastic algorithm to estimate maximum
   likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
   of likelihood while requiring similar amount of computing time (see
   Nguyen et al., 2015)
 * An ultrafast bootstrap approximation to assess branch supports (see
   Minh et al., 2013).
 * A wide range of substitution models for binary, DNA, protein, codon,
   and morphological alignments.
 * Ultrafast model selection for all data types, 10 to 100 times faster
   than jModelTest and ProtTest.
 * Finding best partition scheme like PartitionFinder.
 * Partitioned models with mixed data types for phylogenomic (multi-
   gene) alignments, allowing for separate, proportional, or joint
   branch lengths among genes.
 * Supporting the phylogenetic likelihod library (PLL) (see Flouri et
   al., 2014)

Andere aan iqtree gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC support bibliotheek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmpich12 (>= 4.2.0)

  Shared libraries for MPICH

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

iqtree downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
i386	2.0.7+dfsg-1+b2	3.153,6 kB	22.295,0 kB	[overzicht]