[ Bron: vcfanno ]
Pakket: vcfanno-examples (0.3.5+ds-2)
Verwijzigingen voor vcfanno-examples
Debian bronnen:
Het bronpakket vcfanno downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Nilesh Patra (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest.