Pakket: nanosv (1.2.4+git20190409.c1ae30c-6)

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Homepage [github.com]

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structural variant caller for nanopore data

NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data.

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dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-vcf

Variant Call Format (VCF) parser for Python 3

rec: sambamba

tools for working with SAM/BAM data

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	2.971,8 kB	20.558,0 kB	[overzicht]