Pakket: libfastahack-dev (1.0.0+dfsg-11 en anderen)

[ Bron: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Softwareontwikkeling: Bibliotheken, Role: Development Library

Andere aan libfastahack-dev gerelateerde pakketten

• dep: libfastahack0 (= 1.0.0+dfsg-11+b2)

  library for indexing and sequence extraction from FASTA files (lib)

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Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.0+dfsg-11+b2	27,2 kB	117,0 kB	[overzicht]