Pakket: chromhmm (1.25+dfsg-1)

[ Bron: chromhmm  ]

Chromatin state discovery and characterization

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.

Andere aan chromhmm gerelateerde pakketten

• dep: default-jre

  Standard Java or Java compatible Runtime

  of java7-runtime

  virtueel pakket geboden door default-jre, openjdk-17-jre, openjdk-21-jre

  of java8-runtime

  virtueel pakket geboden door default-jre, openjdk-17-jre, openjdk-21-jre

  of java9-runtime

  virtueel pakket geboden door default-jre, openjdk-17-jre, openjdk-21-jre

  of java10-runtime

  virtueel pakket geboden door default-jre, openjdk-17-jre, openjdk-21-jre

  of java11-runtime

  virtueel pakket geboden door default-jre, openjdk-17-jre, openjdk-21-jre

• dep: libbatik-java

  xml.apache.org SVG Library

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libjheatchart-java

  Heat map charting library for Java

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	193,3 kB	209,0 kB	[overzicht]