Pakket: r-bioc-oligo (1.68.2+ds-1) [debports]

[ Bron:  ]

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Andere aan r-bioc-oligo gerelateerde pakketten

• dep: libblas3

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  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

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  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgfortran5 (>= 8)

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• dep: liblapack3

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  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.19

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-affxparser (>= 1.76.0)

  Affymetrix File Parsing SDK

• dep: r-bioc-affyio (>= 1.74.0)

  BioConductor tools for parsing Affymetrix data files

• dep: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

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• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-oligoclasses (>= 1.66.0)

  Classes for high-throughput arrays supported by oligo and crlmm

• dep: r-bioc-preprocesscore (>= 1.66.0)

  BioConductor collection of pre-processing functions

• dep: r-bioc-zlibbioc (>= 1.50.0)

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• dep: r-cran-dbi (>= 0.3.1)

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• dep: r-cran-ff

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• dep: r-cran-rsqlite (>= 1.0.0)

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• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• sug: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart (>= 2.60.1)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genefilter (>= 1.86.0)

  methods for filtering genes from microarray experiments

• sug: r-bioc-limma (>= 3.60.3)

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• sug: r-cran-knitr

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• sug: r-cran-rcolorbrewer

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• sug: r-cran-rcurl

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• sug: r-cran-runit

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r-bioc-oligo downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
sparc64 (unofficial port)	895,0 kB	2.314,0 kB	[overzicht]