Pakket: r-bioc-annotationhub (3.12.0+dfsg-1)

[ Bron: r-bioc-annotationhub  ]

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Andere aan r-bioc-annotationhub gerelateerde pakketten

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.19

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocfilecache (>= 2.12.0)

  GNU R management of files across sessions

• dep: r-bioc-biocgenerics (>= 0.50.0)

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• dep: r-bioc-biocversion (>= 3.19.1)

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• dep: r-cran-httr

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• dep: r-cran-rsqlite

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• sug: r-bioc-biostrings (>= 2.72.1)

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• sug: r-bioc-ensembldb (>= 2.28.0)

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• sug: r-bioc-experimenthub (>= 2.12.0)

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• sug: r-bioc-genomeinfodb (>= 1.40.1)

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• sug: r-bioc-genomicranges (>= 1.56.1)

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• sug: r-bioc-iranges (>= 2.38.1)

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• sug: r-bioc-rsamtools (>= 2.20.0)

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• sug: r-bioc-rtracklayer (>= 1.64.0)

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• sug: r-bioc-summarizedexperiment (>= 1.34.0)

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• sug: r-bioc-variantannotation (>= 1.50.0)

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• sug: r-cran-knitr

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• sug: r-cran-runit

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