Pakket: r-bioc-edger (4.2.2+dfsg-1)

[ Bron: r-bioc-edger  ]

Empirical analysis of digital gene expression data in R

Bioconductor package for differential expression analysis of whole transcriptome sequencing (RNA-seq) and digital gene expression profiles with biological replication. It uses empirical Bayes estimation and exact tests based on the negative binomial distribution. It is also useful for differential signal analysis with other types of genome-scale count data.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::r, interface::commandline, Role: Program

Andere aan r-bioc-edger gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.19

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-limma (>= 3.41.5)

  linear models for microarray data

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• sug: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-seuratobject

  GNU R data structures for single cell data

r-bioc-edger downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
s390x	1.153,3 kB	1.524,0 kB	[overzicht]