Pakket: tree-ppuzzle (5.3~rc16+dfsg-12 en anderen) [debports]

[ Bron:  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Andere aan tree-ppuzzle gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libopenmpi40 (>= 5.0.6)

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin

  Standard MPI runtime programs (metapackage)

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Pakket niet beschikbaar

tree-ppuzzle downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ppc64 (unofficial port)	5.3~rc16+dfsg-12+b1	196,3 kB	557,0 kB	[overzicht]