Pakket: kleborate (2.1.0-2) [debports]

[ Bron:  ]

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Andere aan kleborate gerelateerde pakketten

• dep: kaptive

  obtain information about K and O types for Klebsiella genome assemblies

• dep: kaptive-data

  reference data for kaptive for Klebsiella genome assemblies

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-distutils

  Pakket niet beschikbaar

kleborate downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
m68k (unofficial port)	7.518,1 kB	61.504,0 kB	[overzicht]