Pakket: r-bioc-phyloseq (1.50.0+dfsg-1)

[ Bron: r-bioc-phyloseq  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

GNU R handling and analysis of high-throughput microbiome census data

The Bioconductor module phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Andere aan r-bioc-phyloseq gerelateerde pakketten

• dep: r-api-4.0

  Pakket niet beschikbaar

• dep: r-api-bioc-3.20

  Pakket niet beschikbaar

• dep: r-bioc-biobase (>= 2.36.2)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.22.0)

  generic functions for Bioconductor

• dep: r-bioc-biomformat (>= 1.0.0)

  GNU R interface package for the BIOM file format

• dep: r-bioc-biostrings (>= 2.40.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-multtest (>= 2.28.0)

  Bioconductor resampling-based multiple hypothesis testing

• dep: r-cran-ade4 (>= 1.7-4)

  GNU R analysis of ecological data

• dep: r-cran-ape (>= 5.0)

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-cluster (>= 2.0.4)

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-data.table (>= 1.10.4)

  GNU R extension of Data.frame

• dep: r-cran-foreach (>= 1.4.3)

  GNU R foreach looping support

• dep: r-cran-ggplot2 (>= 2.1.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.0.1)

  GNU R network analysis and visualization

• dep: r-cran-plyr (>= 1.8.3)

  tools for splitting, applying and combining data

• dep: r-cran-reshape2 (>= 1.4.1)

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-scales (>= 0.4.0)

  Scale functions for visualization

• dep: r-cran-vegan (>= 2.5)

  Community Ecology Package for R

• sug: r-bioc-biocstyle (>= 2.4)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-deseq2 (>= 1.16.1)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genefilter (>= 1.58)

  methods for filtering genes from microarray experiments

• sug: r-bioc-metagenomeseq (>= 1.14)

  GNU R statistical analysis for sparse high-throughput sequencing

• sug: r-cran-knitr (>= 1.16)

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-magrittr (>= 1.5)

  GNU R forward-pipe operator

• sug: r-cran-rmarkdown (>= 1.6)

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat (>= 1.0.2)

  GNU R testsuite

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	2.204,1 kB	3.134,0 kB	[overzicht]