Pakket: fastahack (0.0+git20160702.bbc645f+dfsg-6)

[ Bron: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andere aan fastahack gerelateerde pakketten

• dep: libc6 (>= 2.4)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc1 (>= 1:3.5)

  GCC support bibliotheek

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

fastahack downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
armhf	9,8 kB	31,0 kB	[overzicht]