Pakket: r-bioc-deseq2 (1.30.1+dfsg-1)

[ Bron: r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Andere aan r-bioc-deseq2 gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [niet armel, armhf]

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.12

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.4-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.7.5)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• dep: r-bioc-geneplotter

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.1.6)

  BioConductor assay container

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• rec: r-bioc-glmgampoi

  GNU R fit a Gamma-Poisson generalized linear model

• rec: r-bioc-tximport

  transcript-level estimates for biological sequencing

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

r-bioc-deseq2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.265,5 kB	1.956,0 kB	[overzicht]
arm64	1.252,3 kB	1.916,0 kB	[overzicht]
armel	1.256,6 kB	1.930,0 kB	[overzicht]
armhf	1.254,2 kB	1.858,0 kB	[overzicht]
i386	1.233,7 kB	1.929,0 kB	[overzicht]
mips64el	1.255,0 kB	1.970,0 kB	[overzicht]
mipsel	1.258,6 kB	1.966,0 kB	[overzicht]
ppc64el	1.266,2 kB	2.008,0 kB	[overzicht]
s390x	1.258,9 kB	1.952,0 kB	[overzicht]