Pakket: cufflinks (2.2.1+dfsg.1-8 en anderen) [non-free]

[ Bron: cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

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• dep: libboost-serialization1.74.0 (>= 1.74.0)

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• dep: libboost-thread1.74.0 (>= 1.74.0)

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• dep: libc6 (>= 2.29)

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  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 4.2)

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• dep: libstdc++6 (>= 5.2)

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• dep: python3

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• dep: zlib1g (>= 1:1.2.3.3)

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• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

  Pakket niet beschikbaar

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Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ppc64el	2.2.1+dfsg.1-8+b1	1.549,2 kB	13.797,0 kB	[overzicht]