alle opties
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Bron: libfastahack  ]

Pakket: fastahack (1.0.0+dfsg-7)

Verwijzigingen voor fastahack

Screenshot

Debian bronnen:

Het bronpakket libfastahack downloaden:

Beheerders:

Externe bronnen:

Vergelijkbare pakketten:

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andere aan fastahack gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • enhances

fastahack downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
mips64el 11,8 kB41,0 kB [overzicht]