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[ Bron: libseqlib  ]

Pakket: libseqlib-dev (1.2.0+dfsg-4)

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tags: Softwareontwikkeling: Bibliotheken, Role: Development Library

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 206,2 kB1.203,0 kB [overzicht]
arm64 199,5 kB1.193,0 kB [overzicht]
armel 201,1 kB1.115,0 kB [overzicht]
armhf 204,4 kB1.015,0 kB [overzicht]
i386 219,9 kB1.034,0 kB [overzicht]
mips64el 223,7 kB1.438,0 kB [overzicht]
mipsel 221,4 kB1.115,0 kB [overzicht]
ppc64el 219,6 kB1.310,0 kB [overzicht]
s390x 190,7 kB1.211,0 kB [overzicht]