Pakket: libbio-samtools-perl (1.43-3 en anderen)

[ Bron: libbio-samtools-perl  ]

Perl interface to SamTools library for DNA sequencing

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library, Shared Library

Andere aan libbio-samtools-perl gerelateerde pakketten

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libc6 (>= 2.15)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: perl (>= 5.32.0-4)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.32.0

  virtueel pakket geboden door perl-base

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• enh: gbrowse

  GMOD Generic Genome Browser

• enh: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

libbio-samtools-perl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
i386	1.43-3+b1	205,7 kB	689,0 kB	[overzicht]