Pakket: yanosim (0.1-3)

[ Bron: yanosim  ]

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model:

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.

2. yanosim quantify:

   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.

3. yanosim simulate:

   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Andere aan yanosim gerelateerde pakketten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

yanosim downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
arm64	9,1 kB	45,0 kB	[overzicht]