Pakket: jellyfish (2.3.0-10)

[ Bron: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Andere aan jellyfish gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.0-10)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

jellyfish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
arm64	688,8 kB	2.297,0 kB	[overzicht]