Pakket: spades (3.13.1+dfsg-2 en anderen)

[ Bron: spades  ]

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Python, User Interface: interface::commandline, role::program, Scope: Utility, Works with: works-with::biological-sequence, works-with::file

Andere aan spades gerelateerde pakketten

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: bwa

  Burrows-Wheeler Aligner

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 4.0)

  GCC support bibliotheek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhat-trie0

  HAT-trie, an extremely efficient (space and time) modern variant of tries

• dep: libnlopt0 (>= 2.6.1)

  nonlinear optimization library

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-distutils

  distutils package for Python 3.x

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-yaml

  YAML parser and emitter for Python3

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

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Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	3.13.1+dfsg-2+b2	4.664,7 kB	22.622,0 kB	[overzicht]