Pakket: rockhopper (2.0.3+dfsg2-3)

[ Bron: rockhopper  ]

system for analyzing bacterial RNA-seq data

Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input, Rockhopper takes RNA sequencing reads output by high-throughput sequencing technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports the following tasks:

 * Reference based transcript assembly (when one or more reference
   genomes are available)
   - Aligning reads to genomes
   - Assembling transcripts
   - Identifying transcript boundaries and novel transcripts such as
     small RNAs
 * De novo transcript assembly (when reference genomes are unavailable)
 * Normalizing data from different experiments
 * Quantifying transcript abundance
 * Testing for differential gene expression
 * Characterizing operon structures
 * Visualizing results in a genome browser

Andere aan rockhopper gerelateerde pakketten

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: igv

  Integrative Genomics Viewer

rockhopper downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	582,7 kB	650,0 kB	[overzicht]