[ Bron: shasta ]
Pakket: shasta (0.11.1-1 en anderen)
Verwijzigingen voor shasta
Debian bronnen:
Het bronpakket shasta downloaden:
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the executable binaries (tools) and accommodating scripts.
Andere aan shasta gerelateerde pakketten
|
|
|
|
-
- dep: libboost-chrono1.74.0 (>= 1.74.0)
- C++ representation of time duration, time point, and clocks
-
- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
-
- dep: libc6 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3-shasta (= 0.11.1-1+b1)
- nanopore whole genome assembly (dynamic library)