Pakket: tophat-recondition (1.4-3)

[ Bron: tophat-recondition  ]

post-processor for TopHat unmapped reads

tophat-recondition is a post-processor for TopHat unmapped reads (contained in unmapped.bam), making them compatible with downstream tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It also works around bugs in TopHat:

 * the "mate is unmapped" SAM flag is not set on any reads in the
   unmapped.bam file (TopHat issue #3)
 * the mapped mate of an unmapped read can be absent from
   accepted_hits.bam, creating a mismatch between the file and the unmapped
   read's flags (TopHat issue #16)

Andere aan tophat-recondition gerelateerde pakketten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• sug: tophat2

  Pakket niet beschikbaar

tophat-recondition downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	10,9 kB	36,0 kB	[overzicht]