Pakket: plip (2.2.2+dfsg-1)

[ Bron: plip  ]

fully automated protein-ligand interaction profiler

The Protein-Ligand Interaction Profiler (PLIP) is a tool to analyze and visualize protein-ligand interactions in PDB files.

Features include:

 * Detection of eight different types of noncovalent interactions
 * Automatic detection of relevant ligands in a PDB file
 * Direct download of PDB structures from wwPDB server if valid
   PDB ID is given
 * Processing of custom PDB files containing protein-ligand complexes
   (e.g. from docking)
 * No need for special preparation of a PDB file, works out of the box
 * Atom-level interaction reports in rST and XML formats for easy parsing
 * Generation of PyMOL session files (.pse) for each pairing, enabling easy
   preparation of images for publications and talks
 * Rendering of preview image for each ligand and its interactions
   with the protein

Andere aan plip gerelateerde pakketten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-lxml

  pythonic binding for the libxml2 and libxslt libraries

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-openbabel

  Chemical toolbox library (Python bindings)

• rec: pymol

  Molecular Graphics System

plip downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	82,3 kB	383,0 kB	[overzicht]