Pakket: boxshade (3.3.1-14)

[ Bron: boxshade  ]

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag, Text

Andere aan boxshade gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [niet amd64, arm64, ppc64el]

• sug: kalign

  Global and progressive multiple sequence alignment

  of clustalw

  global multiple nucleotide or peptide sequence alignment

  of mafft

  Multiple alignment program for amino acid or nucleotide sequences

  of hmmer

  profile hidden Markov models for protein sequence analysis

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: texlive-latex-extra

  TeX Live: LaTeX additional packages

• sug: xfig

  Facility for Interactive Generation of figures under X11

boxshade downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	54,5 kB	161,0 kB	[overzicht]
arm64	53,1 kB	160,0 kB	[overzicht]
armel	54,6 kB	163,0 kB	[overzicht]
armhf	52,9 kB	135,0 kB	[overzicht]
i386	56,0 kB	176,0 kB	[overzicht]
mips64el	53,3 kB	187,0 kB	[overzicht]
mipsel	52,9 kB	173,0 kB	[overzicht]
ppc64el	56,4 kB	193,0 kB	[overzicht]
s390x	52,9 kB	168,0 kB	[overzicht]