Package: seer (1.1.4-8 and others)

[ Source: seer  ]

genomic sequence element (kmer) enrichment analysis

Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.

Other Packages Related to seer

• dep: libarmadillo14 (>= 1:14.2.1+dfsg)

  streamlined C++ linear algebra library

• dep: libblas3

  기본 선형 대수 참조 구현, 공유 라이브러리

  or libblas.so.3

  virtual package provided by libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.38)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 기능 지원 라이브러리

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhdf5-310 (>= 1.14.3)

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 14)

  GNU 표준 C++ 라이브러리 v3

• dep: libtext-csv-perl

  comma-separated values manipulator (using XS or PurePerl)

• dep: zlib1g (>= 1:1.1.4)

  압축 라이브러리 - 런타임

• sug: fsm-lite

  frequency-based string mining (lite)

Download seer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
ppc64el	1.1.4-8+b1	1,170.2 kB	5,348.0 kB	[list of files]