Package: pizzly (0.37.3+ds-9)

[ Source: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.34)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 기능 지원 라이브러리

• dep: libstdc++6 (>= 12)

  GNU 표준 C++ 라이브러리 v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  압축 라이브러리 - 런타임

• rec: python3-h5py

  general-purpose Python interface to hdf5

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Architecture	Package Size	Installed Size	Files
ppc64el	285.1 kB	992.0 kB	[list of files]