Package: minia (3.2.6-4 and others) [debports]

[ Source:  ]

short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Other Packages Related to minia

• dep: bc

  GNU bc 임의 정밀도 계산 언어

• dep: libc6 (>= 2.34)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC 기능 지원 라이브러리

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 13.1)

  GNU 표준 C++ 라이브러리 v3

• dep: zlib1g

  압축 라이브러리 - 런타임

• rec: samtools

  SAM, BAM, CRAM 형식에서 시퀀스 정렬 처리

• sug: bandage

  Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Download minia

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
ppc64 (unofficial port)	3.2.6-4+b1	391.9 kB	889.0 kB	[list of files]