Package: concavity (0.1+dfsg.1-5) [debports]
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- Homepage [compbio.cs.princeton.edu]
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predictor of protein ligand binding sites from structure and conservation
ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.
ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.
The following result files are produced by default:
* Residue ligand binding predictions for each chain (*.scores). * Residue ligand binding predictions in a PDB format file (residue scores placed in the temp. factor field, *_residue.pdb). * Pocket prediction locations in a DX format file (*.dx). * PyMOL script to visualize the predictions (*.pml).
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Download concavity
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
ppc64 (unofficial port) | 252.3 kB | 1,194.0 kB | [list of files] |