Package: megadepth (1.2.0-4 and others)

[ Source: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0t64 (>= 0.4.6)

  C library for handling bigWig files

• dep: libc6 (>= 2.34)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC 기능 지원 라이브러리

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU 표준 C++ 라이브러리 v3

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

Download megadepth

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
armel	1.2.0-4+b1	70.9 kB	234.0 kB	[list of files]