Package: centrifuge (1.0.3-2)

[ Source: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Other Packages Related to centrifuge

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.14)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC 기능 지원 라이브러리

• dep: libstdc++6 (>= 5.2)

  GNU 표준 C++ 라이브러리 v3

• dep: python

  대화형 고급 객체 지향 언어 (파이선2 버젼)

Download centrifuge

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	518.4 kB	1,650.0 kB	[list of files]