Package: ssake (4.0-2)

[ Source: ssake  ]

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

Tags: Field: Biology, Implemented in: Perl, implemented-in::python, interface::commandline, User Interface: Command Shell, Role: role::program, scope::utility, Purpose: Analysing

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