Package: pigx-rnaseq (0.0.10+ds-2)

[ Source: pigx-rnaseq  ]

pipeline for checkpointed and distributed RNA-seq analyses

This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.

Other Packages Related to pigx-rnaseq

• dep: fastqc

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• dep: libjs-jquery-datatables

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• dep: libjs-jquery-tablesorter

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• dep: multiqc

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• dep: pandoc-citeproc

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• dep: python3

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• dep: python3-deeptools

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• dep: python3-htseq

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• dep: r-bioc-deseq2

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• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-tximport

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• dep: r-cran-data.table

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• dep: r-cran-dt (>= 0.15+dfsg-2)

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• dep: r-cran-ggplot2

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• dep: r-cran-gprofiler

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• dep: r-cran-plotly

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• dep: r-cran-reshape2

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• dep: r-cran-rjson

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• dep: r-cran-rlang

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• dep: r-cran-rmarkdown

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• dep: r-cran-scales

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• dep: rna-star

  ultrafast universal RNA-seq aligner

• dep: salmon

  wicked-fast transcript quantification from RNA-seq data

• dep: samtools

  SAM, BAM, CRAM 형식에서 시퀀스 정렬 처리

• dep: snakemake

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• dep: trim-galore

  automate quality and adapter trimming for DNA sequencing

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