all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: r-bioc-dnacopy  ]

Package: r-bioc-dnacopy (1.64.0-1)

Links for r-bioc-dnacopy

Screenshot

Debian Resources:

Download Source Package r-bioc-dnacopy:

Maintainers:

External Resources:

Similar packages:

R package: DNA copy number data analysis

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

This package is for analyzing array DNA copy number data, which is usually (but not always) called array Comparative Genomic Hybridization (array CGH) data It implements a methodology for finding change-points in these data which are points after which the (log) test over reference ratios have changed location. This model is that the change-points correspond to positions where the underlying DNA copy number has changed. Therefore, change-points can be used to identify regions of gained and lost copy number. Also provided is a function for making relevant plots of these data.

Other Packages Related to r-bioc-dnacopy

  • depends
  • recommends
  • suggests
  • enhances

Download r-bioc-dnacopy

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 410.0 kB529.0 kB [list of files]
arm64 408.1 kB521.0 kB [list of files]
armel 411.7 kB536.0 kB [list of files]
armhf 406.8 kB508.0 kB [list of files]
i386 409.8 kB524.0 kB [list of files]
mips64el 409.0 kB522.0 kB [list of files]
mipsel 409.4 kB521.0 kB [list of files]
ppc64el 412.7 kB545.0 kB [list of files]
s390x 409.3 kB525.0 kB [list of files]