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[ Source: seaview  ]

Package: seaview (1:5.0.5-2)

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Multiplatform interface for sequence alignment and phylogeny

SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.

SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, implemented-in::c++, User Interface: Command Line, interface::graphical, interface::x11, Networking: Client, Network Protocol: Need an extra tag, Role: role::program, scope::utility, Interface Toolkit: FLTK, Purpose: Need an extra tag, use::comparing, use::editing, Printing, use::viewing, works-with-format::plaintext, Works with: works-with::biological-sequence, x11::application

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Download seaview

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 382.8 kB1,011.0 kB [list of files]
arm64 339.7 kB951.0 kB [list of files]
armel 318.5 kB947.0 kB [list of files]
armhf 317.9 kB691.0 kB [list of files]
i386 395.3 kB1,060.0 kB [list of files]
mips64el 370.9 kB1,194.0 kB [list of files]
mipsel 372.2 kB1,183.0 kB [list of files]
ppc64el 416.9 kB1,271.0 kB [list of files]
s390x 347.8 kB1,039.0 kB [list of files]