Package: grabix (0.1.7-4)

[ Source: grabix  ]

wee tool for random access into BGZF files

In biomedical research it is increasing practice to study the genetic basis of disease. This now frequently comprises the sequencing of human sequences. The output of the machine however is redundant, and the real sequence is the best sequence to explain the redundancy. The exchange of data happens only with compressed files - to huge and redundant to perform otherwise. One should avoid uncompression whenever possible.

grabix leverages the fantastic BGZF library of the samtools package to provide random access into text files that have been compressed with bgzip. grabix creates it's own index (.gbi) of the bgzipped file. Once indexed, one can extract arbitrary lines from the file with the grab command. Or choose random lines with the, well, random command.

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• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf]

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Architecture	Package Size	Installed Size	Files
amd64	14.4 kB	56.0 kB	[list of files]
arm64	13.9 kB	92.0 kB	[list of files]
armel	15.5 kB	91.0 kB	[list of files]
armhf	14.9 kB	91.0 kB	[list of files]
i386	15.7 kB	55.0 kB	[list of files]
mips64el	14.8 kB	93.0 kB	[list of files]
mipsel	15.9 kB	92.0 kB	[list of files]
ppc64el	14.7 kB	92.0 kB	[list of files]
s390x	13.8 kB	52.0 kB	[list of files]