パッケージ: estscan (3.0.3-6)
estscan に関するリンク
Debian の資源:
estscan ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [estscan.sourceforge.net]
類似のパッケージ:
ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity.
ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics.
その他の estscan 関連パッケージ
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- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgfortran5 (>= 8)
- GNU Fortran アプリケーション用ランタイムライブラリ
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- dep: perl
- Larry Wall 作の実用的な抽出とレポート用の言語