パッケージ: seqan-needle (1.0.3+ds-1)
seqan-needle に関するリンク
Debian の資源:
seqan-needle ソースパッケージをダウンロード:
- [seqan-needle_1.0.3+ds-1.dsc]
- [seqan-needle_1.0.3+ds.orig.tar.xz]
- [seqan-needle_1.0.3+ds-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
pre-filter for the counting of very large collections of nucleotide sequences
Needle is a tool for semi-quantitative analysis of very large collections of nucleotide sequences.
Needle stores its data in multiple interleaved Bloom filter, a fast and space efficient probabilistic data structure and uses a windowing scheme (also called minimisers) to reduce the amount of data to store. How many interleaved Bloom filter are used is defined by the user. Each interleaved Bloom filter has a so called expression threshold and stores minimisers with an occurrence greater than or equal to its own expression threshold and smaller than the next biggest expression threshold (if there is no bigger expression threshold, all greater than or equal to the threshold are stored). These expression thresholds are then used during the query (called estimate) to approximate the expression values of given transcripts.
その他の seqan-needle 関連パッケージ
|
|
|
|
-
- dep: libbz2-1.0
- 高品質なブロックソートファイル圧縮器 - ランタイム
-
- dep: libc6 (>= 2.38)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC 共有ライブラリ
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) サポートライブラリ
-
- dep: libstdc++6 (>= 14)
- GNU 標準 C++ ライブラリ v3
-
- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム