trixie の all アーキテクチャ用 hyphy-common パッケージのファイル一覧

/usr/lib/hyphy/bin/simd-dispatch
/usr/share/doc/hyphy-common/changelog.Debian.gz
/usr/share/doc/hyphy-common/copyright
/usr/share/doc/hyphy-common/examples/BatchLanguage/MatrixIndexing.bf
/usr/share/doc/hyphy-common/examples/BatchLanguage/profile_test.bf
/usr/share/doc/hyphy-common/examples/Categories/data/aspectrin.nuc
/usr/share/doc/hyphy-common/examples/Categories/definitions+MLE.bf
/usr/share/doc/hyphy-common/examples/Categories/definitions.bf
/usr/share/doc/hyphy-common/examples/Categories/definitions2.bf
/usr/share/doc/hyphy-common/examples/Categories/definitions3.bf
/usr/share/doc/hyphy-common/examples/Categories/displayFunction.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint1.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint2.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint3.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/data/hiv.seq
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/shared.bf
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks.bf
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks2models.bf
/usr/share/doc/hyphy-common/examples/DataFilters/data/actin2.flt
/usr/share/doc/hyphy-common/examples/MoreComplexModels/ExonIntron.bf
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/EI.mdl
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/MG94x2.mdl
/usr/share/doc/hyphy-common/examples/MoreComplexModels/aa.bf
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/3.seq
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/stewart.aa
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/ubiq.flt
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/F81.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85shared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/JC69.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2P.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2Pshared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/Non-Rev.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REV.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REVshared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/data/hiv.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81K81uf_relratio.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relrate.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relratio.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relrate.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relratio.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockF81.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockHKY85.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/3.seq
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin1.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin2.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/molclock.seq
/usr/share/doc/hyphy-common/examples/Simulation/PBootstrapHetRates.bf
/usr/share/doc/hyphy-common/examples/Simulation/ParametricBootstrap.bf
/usr/share/doc/hyphy-common/examples/Simulation/RelativeRatePBS.bf
/usr/share/doc/hyphy-common/examples/Simulation/data/3.seq
/usr/share/doc/hyphy-common/examples/Simulation/data/hiv.nuc
/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Ciliate.cod
/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod
/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod
/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal
/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated
/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set
/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal
/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated
/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
/usr/share/hyphy/SubstitutionClasses/aa.bf
/usr/share/hyphy/SubstitutionClasses/codon.bf
/usr/share/hyphy/SubstitutionClasses/dinuc.bf
/usr/share/hyphy/SubstitutionClasses/nuc.bf
/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl
/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl
/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69
/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def
/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf
/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf
/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf
/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf
/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf
/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf
/usr/share/hyphy/TemplateBatchFiles/BGM.bf
/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf
/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf
/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf
/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf
/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf
/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf
/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf
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/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def
/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def
/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def
/usr/share/hyphy/TemplateBatchFiles/Distances/JC69
/usr/share/hyphy/TemplateBatchFiles/Distances/K2P
/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV
/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori
/usr/share/hyphy/TemplateBatchFiles/Distances/PC
/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH
/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV
/usr/share/hyphy/TemplateBatchFiles/Distances/T3P
/usr/share/hyphy/TemplateBatchFiles/Distances/TN84
/usr/share/hyphy/TemplateBatchFiles/Distances/TN93
/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV
/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ
/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR
/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance
/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa
/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary
/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon
/usr/share/hyphy/TemplateBatchFiles/F_ST.bf
/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf
/usr/share/hyphy/TemplateBatchFiles/GARD.bf
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/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf
/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def
/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf
/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf
/usr/share/hyphy/TemplateBatchFiles/KHTest.bf
/usr/share/hyphy/TemplateBatchFiles/LEISR.bf
/usr/share/hyphy/TemplateBatchFiles/LHT.bf
/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf
/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf
/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf
/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf
/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf
/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf
/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf
/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf
/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf
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/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf
/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf
/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf
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/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf
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/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf
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/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf
/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf
/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf
/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf
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/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf
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/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
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/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl
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/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl
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