ソースパッケージ: bcbio (1.2.9-3)
[contrib]
bcbio に関するリンク
Debian の資源:
メンテナ:
外部の資源:
以下のバイナリパッケージがこのソースパッケージからビルドされています。
- bcbio
- toolkit for analysing high-throughput sequencing data
- python3-bcbio
- library for analysing high-throughput sequencing data
その他の bcbio 関連パッケージ
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debhelper-compat
(= 13)
- パッケージは利用できません
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dh-sequence-python3
- 以下のパッケージによって提供される仮想パッケージです:
dh-python
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python3-setuptools
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python3-pybedtools
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python3-tornado
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python3-psutil
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python3-joblib
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atropos
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bcftools
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bedtools
- suite of utilities for comparing genomic features
-
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biobambam2
- tools for early stage alignment file processing
-
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bowtie2
- ultrafast memory-efficient short read aligner
-
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bwa
- Burrows-Wheeler Aligner
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cnvkit
- Copy number variant detection from targeted DNA sequencing
-
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fastqc
- quality control for high throughput sequence data
-
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freebayes
- Bayesian haplotype-based polymorphism discovery and genotyping
-
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gffread
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grabix
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-
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gsort
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-
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hisat2
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-
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libfreetype6
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lumpy-sv
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multiqc
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-
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perl
- Larry Wall 作の実用的な抽出とレポート用の言語
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libpicard-java
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libvcflib-tools
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picard-tools
- Command line tools to manipulate SAM and BAM files
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python3-biopython
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python3-cyvcf2
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python3-geneimpacts
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python3-logbook
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python3-requests
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-
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r-bioc-purecn
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r-bioc-summarizedexperiment
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-
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- adep:
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-
- adep:
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-
- adep:
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- adep:
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snpeff
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- adep:
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- adep:
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-
- adep:
umis
- tools for processing UMI RNA-tag data
-
- adep:
vcfanno
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-
- adep:
vt
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- adep:
wham-align
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xonsh
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-
- adep:
libhts-dev
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-
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python3-sphinx
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