[ ソース: pilon ]
パッケージ: pilon (1.24-3)
automated genome assembly improvement and variant detection tool
Pilon is a software tool which can be used to:
* Automatically improve draft assemblies * Find variation among strains, including large event detectionPilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identify inconsistencies between the input genome and the evidence in the reads. It then attempts to make improvements to the input genome, including:
* Single base differences * Small indels * Larger indel or block substitution events * Gap filling * Identification of local misassemblies, including optional opening of new gaps
その他の pilon 関連パッケージ
|
|
|
|
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: java-wrappers
- wrappers for java executables
-
- dep: libcommons-lang-java
- Commons Lang - an extension of the java.lang package
-
- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
-
- dep: scala-library
- Scala standard library