パッケージ: brig (0.95+dfsg-3) [debports]
BLAST Ring Image Generator
BRIG can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.
* Images show similarity between a central reference sequence and other sequences as concentric rings. * BRIG will perform all BLAST comparisons and file parsing automatically via a simple GUI. * Contig boundaries and read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed. * Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data. * BRIG also accepts SAM-formatted read-mapping files enabling genomic regions present in unassembled sequence data from multiple samples to be compared simultaneously
その他の brig 関連パッケージ
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- dep: cgview
- Circular Genome Viewer
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- dep: default-jre
- Standard Java or Java compatible Runtime
- または java6-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre
- または java7-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre
- または java8-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre
- または java9-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre
- または java10-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre
- または java11-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre
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- dep: jarwrapper (>= 0.5)
- Run executable Java .jar files
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- dep: libjdom1-java
- lightweight and fast library using XML
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- dep: libswing-layout-java
- Extensions to Swing layout