[ ソース: rockhopper ]
パッケージ: rockhopper (2.0.3+dfsg2-4)
rockhopper に関するリンク
Debian の資源:
rockhopper ソースパッケージをダウンロード:
- [rockhopper_2.0.3+dfsg2-4.dsc]
- [rockhopper_2.0.3+dfsg2.orig-debian-tests-data.tar.xz]
- [rockhopper_2.0.3+dfsg2.orig.tar.xz]
- [rockhopper_2.0.3+dfsg2-4.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [cs.wellesley.edu]
類似のパッケージ:
system for analyzing bacterial RNA-seq data
Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input, Rockhopper takes RNA sequencing reads output by high-throughput sequencing technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports the following tasks:
* Reference based transcript assembly (when one or more reference
genomes are available)
- Aligning reads to genomes
- Assembling transcripts
- Identifying transcript boundaries and novel transcripts such as
small RNAs
* De novo transcript assembly (when reference genomes are unavailable)
* Normalizing data from different experiments
* Quantifying transcript abundance
* Testing for differential gene expression
* Characterizing operon structures
* Visualizing results in a genome browser
その他の rockhopper 関連パッケージ
|
|
|
|
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: igv
- Integrative Genomics Viewer